[+16] Best Accounting Software For Shopify

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[+16] Best Accounting Software For Shopify

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Managing finances effectively is paramount to the success of any Shopify store. As entrepreneurs navigate the intricacies of online business, robust accounting software tailored to the Shopify platform becomes indispensable. With many options available, selecting the right accounting software can seem daunting. Don't worry; this blog will bring Best Accounting Software For Shopify that will help streamline financial operations and help Shopify merchants grow.

But what exactly constitutes the best accounting software for Shopify? Let's explore the perfect financial companion for your Shopify store, unlocking efficiency, insight, and success.

What is Shopify Accounting Software?

best accounting software for shopify

Shopify accounting software seamlessly integrates with the Shopify platform, offering merchants a tailored solution for managing financial transactions, tracking expenses, and generating detailed reports. Unlike generic accounting software, it's designed explicitly for eCommerce businesses, providing specialized features to streamline workflows and optimize financial management.

At its core, Shopify accounting software serves as the financial backbone of your online store, enabling you to track sales, monitor inventory, and reconcile payments easily. By automating repetitive tasks and centralizing financial data, these software solutions empower merchants to focus on growing their business rather than getting bogged down by tedious administrative work.

Moreover, Shopify accounting software goes beyond basic bookkeeping functions, offering advanced features such as multi-channel integration, tax calculation, and inventory management. It serves as a lifeline for merchants, providing them with the tools and insights to make informed decisions, drive profitability, and achieve long-term success. 

What are the Benefits of Using Accounting Software for Shopify?

Using accounting software tailored for Shopify offers many benefits that elevate financial management for merchants. Let's delve into the advantages:

Increased Efficiency and Accuracy

Shopify accounting software surpasses traditional spreadsheets in efficiency and accuracy. Through intelligent automation, it streamlines data input processes, saving significant time and effort for Shopify sellers. The risk of human error decreases as the software accurately calculates taxes, monitors inventory levels, and prepares financial reports without manual intervention. 

This precision ensures dependable financial data, guiding effective decision-making for business growth. Real-time updates across systems and platforms provide users instant access to information, a feature spreadsheets can't match.

Streamlined Financial Management

Shopify accounting software facilitates swift and simplified financial management for eCommerce businesses. Novel features like invoice generation, expense tracking, tax calculation, and inventory management reduce the manual labor involved in financial tasks. Business owners can monitor cash flow in real time, empowering them to make informed decisions promptly. 

The direct integration of accounting software with Shopify stores automates sales data syncing, ensuring accurate business records and saving time on manual entry. This integration also aids in maintaining precise business records crucial for strategic decision-making.

Integration with Shopify Platform for Real-time Data

Shopify's accounting software seamlessly integrates with the platform, providing real-time data at merchants' fingertips. This dynamic integration eliminates the need for manual data entry, reducing errors and saving time. With an updated financial snapshot always available, businesses can make informed decisions swiftly and confidently. 

Immediate access to key metrics such as sales trends, inventory levels, and customer information ensures agility and responsiveness to market changes. Accurate financial reports are easily accessible, simplifying end-of-year tax preparations or audits. Shopify's integration of effective accounting software into its platform makes handling finances easier.

What Makes The Best Shopify Accounting Software?

best accounting software for shopify

When selecting accounting software for Shopify, several key features are essential to ensure optimal functionality and seamless integration. Here are the crucial factors to consider:

  • In-depth Accounting Capabilities: The hallmark of exceptional accounting software for Shopify is its ability to provide in-depth accounting functionality. It should offer comprehensive reports encompassing all aspects of your financial transactions, including sales, expenses, taxes, and inventory. A robust accounting app must prioritize accuracy and provide detailed insights into your business's financial health.
  • App Integration: Seamless integration with the Shopify platform and its apps is paramount for efficient operation. The best Shopify accounting software should effortlessly sync with your Shopify store and other relevant applications, ensuring smooth data flow and eliminating the need for manual data entry. This integration streamlines workflows and enhances productivity, enabling merchants to focus on growing their business.
  • Solid Support: Access to reliable customer support is vital when choosing accounting software. Whether it's live chat, a responsive customer care phone line, or email support, having access to prompt assistance ensures smooth operation and mitigates any issues that may arise. A robust support system helps merchants navigate challenges effectively and maximize their utilization of the accounting software.
  • Sales Tax Configuration: Simplifying the sales tax process is essential for eCommerce businesses. The best Shopify accounting software should offer robust sales tax configuration capabilities, allowing merchants to calculate and manage their sales tax obligations accurately. By automating this process, the software reduces the administrative burden and ensures compliance with tax regulations, ultimately saving time and minimizing errors.

The best Shopify accounting software combines in-depth accounting capabilities, seamless app integration, solid customer support, and advanced sales tax configuration features. 

Top 16 Best Accounting Software For Shopify

1. FreshBooks

best accounting software for shopify

FreshBooks is one of today's most popular and well-known small business accounting tools. Its accounting software features smart technologies and back-office automation to reduce manual data entry and simplify bookkeeping tasks. For instance, FreshBooks automates tasks like credit and debit reconciliation and automatically imports financial data from various sources. Users can conveniently access essential financial statements such as balance sheets, income, and cash flow statements.

Highlight Features:

  • Smart Technologies: FreshBooks incorporates smart technologies and back-office automation to streamline bookkeeping processes.
  • Automated Reconciliation: Automatically reconciles credit and debit amounts, saving users time and effort.
  • Financial Statements: Users can easily access essential financial statements like balance sheets, income, and cash flow statements.
  • Access Permissions: Users can adjust access permissions individually, granting limited access to employees and additional privileges to accountants.

Pros

Cons

Highly rated customer support

Limited number of users and clients

Time-tracking and mileage-tracking features are included in all plans

Lowest-tier plans don’t offer bank reconciliation or accountant access

Wide range of cloud accounting features

No quarterly tax estimates

Available for: Web application (cloud-based software)

Shopify app or integration: Yes

Pricing: Plans begin at $4.50 per month for the lite plan

 

2. Sage

best accounting software for shopify

Sage 50cloud Accounting offers comprehensive, cloud-based accounting software tailored for small businesses. With extensive customization options and advanced features, Sage 50cloud aims to streamline accounting processes for businesses of all sizes. The software integrates seamlessly with Microsoft Office, enhancing productivity and collaboration.

Highlight Features:

  • Comprehensive Accounting: Sage 50cloud's Pro Accounting plan handles various accounting tasks, including expense management, invoicing, and inventory tracking.
  • Customization Options: Many customization options are available to fit the unique needs of each business.
  • Microsoft Integration: Seamless integration with Microsoft Office enhances productivity and collaboration.

Pros

Cons

Lots of customization options

No mobile app

Tools to manage and track inventory

Clunky user interface

Microsoft 365 integration

Time tracking not included with any plan option

Available for: Web application (cloud-based software), Microsoft 365 integration

Shopify app or integration: No

Pricing: Plans begin at $346/year

 

3. Zarmoney

best accounting software for shopify

Zarmoney provides a comprehensive cloud-based accounting solution suitable for businesses of all sizes. With a focus on flexibility and scalability, Zarmoney offers a wide range of accounting and financial management tools to meet the diverse needs of businesses.

Highlight Features:

  • Flexible and Scalable: Zarmoney offers a flexible and scalable accounting solution suitable for businesses of all sizes.
  • Extensive Inventory Management: The platform includes comprehensive features to help businesses track and manage their inventory effectively.
  • Customizable Invoices and Financial Reports: Zarmoney allows users to customize invoices and financial reports to meet their needs.

Pros

Cons

Flexible and scalable solution

Learning curve for new users due to extensive features

Extensive inventory management and time tracking features

Additional costs for multi-user access in the small business plan

Customizable invoices and financial reports

Limited mobile app functionality compared to competitors

Shopify Integration: Yes

Pricing: 

  • Entrepreneur - $15/mo
  • Small Business - $20/mo
  • Enterprise - Starts from $350/mo

 

4. QuickBooks 

best accounting software for shopify

QuickBooks Online by Intuit is a popular accounting platform designed to help business owners manage their accounting quickly and efficiently. With a clean and simple interface, intuitive reporting, and comprehensive features, QuickBooks Online is suitable for businesses of all sizes.

Highlight Features

  • Comprehensive Accounting: QuickBooks Online offers everything small business owners need to take control of their bookkeeping, including mileage, income, and expense tracking, sales and tax reporting, and tools to manage 1099 contractors.
  • Inventory Management: Included with QuickBooks Online Plus and Advanced plans.
  • Third-Party App Integration: QuickBooks Online seamlessly integrates with third-party apps to enhance functionality.

Pros

Cons

Inventory management included with QuickBooks Online Plus and Advanced

Monthly plans are pricier than other accounting software options

Double-entry accounting reports

Each plan allows only a limited number of account users

Third-party app integration

Advanced features come with a learning curve

Available for: OS X, Windows, web application (cloud-based software)

Shopify App or Integration: Yes

Pricing:

  • Simple Start - $30/mo
  • Essentials - $60/mo
  • Plus - $90/mo
  • Advanced - $200/mo

 

5. Holded

best accounting software for shopify

Holded is an all-in-one business management and accounting platform designed to simplify operations for businesses. It offers a range of tools for invoicing, inventory management, project management, and customer relationship management (CRM), all integrated into one platform for ease of use.

Highlight Features:

  • Comprehensive Platform: Holded provides an all-in-one solution for business management and accounting needs.
  • User-Friendly Interface: The platform offers a user-friendly interface with customizable dashboards for easy navigation.
  • Automated Invoicing and Financial Reporting: Holded automates invoicing processes and offers real-time financial reporting for better decision-making.

Pros

Cons

Comprehensive all-in-one platform

Advanced features available only in higher-tier plans

User-friendly interface

Limited third-party app integrations

Automated invoicing and real-time financial reporting

CRM features could be more robust

Pricing: 

  • Basic - €29/mo
  • Standard - €59/mo
  • Advanced - €99/mo
  • Premium - €199/mo

 

6. Kashoo

best accounting software for shopify

Kashoo's small business accounting software is designed to automate much of the administrative work behind bookkeeping. With machine-learning algorithms, Kashoo analyzes various aspects of your business, from receipt categorization to sales tax tracking, providing individualized recommendations to save money, minimize waste, and streamline efficiency.

Highlight Features: 

  • Automated Bookkeeping: Kashoo's intelligent algorithms automate administrative processes, saving time and effort.
  • Personalized Recommendations: The tool provides individualized recommendations based on your business activities.
  • User-Friendly Interface: Kashoo offers a user-friendly interface for easy navigation and operation.

Pros

Cons

User-friendly interface

No Android mobile app

Unlimited number of users

Relatively few integration options

Great customer support

Lacks features like time-tracking and inventory management

Automation of administrative processes

Available for: Web application (cloud-based software)

Shopify App or Integration: No

Pricing:

  • Trulysmall - $216/Year
  • Kashoo - $324/Year

 

7. Wave

best accounting software for shopify

Wave is an accounting tool designed for small businesses, offering comprehensive features at no cost. Available for Windows and OS X, with Android and iOS apps for invoicing and receipts, Wave is ideal for newly launched independent businesses seeking efficient accounting solutions without breaking the bank.

Highlight Features: 

  • Free of Charge: Wave is 100% free, making it accessible for businesses with limited budgets.
  • Comprehensive Functionality: Wave offers expense management, banking reconciliation, payroll, invoicing, and more.
  • Mobile Accessibility: Android and iOS apps allow for on-the-go invoicing and receipt management.

Pros

Cons

Completely free

No phone support; live chat only available for paid add-ons

Double-entry accounting reports

No updates planned for current features

Unlimited users with control over user permissions

No advanced accounting options

Unlimited invoice creation with customizable templates

Mobile invoicing accounting app


Available for: Web application (cloud-based software)

Shopify App or Integration: No

Pricing: FREE

 

8. OneUp

best accounting software for shopify

OneUp simplifies bookkeeping by automating routine tasks and learning from user inputs to provide accurate suggestions for reconciliations and invoice matching. With features like excellent inventory management and built-in CRM functions, OneUp aims to streamline business accounting processes.

Highlight Features: 

  • Automated Bookkeeping: OneUp learns from user inputs and offers accurate suggestions for reconciliations and invoice matching.
  • Inventory Management: An excellent inventory management module is included.
  • Built-in CRM: CRM function integrated for efficient customer management.
  • Banking Integration: Pulls in banking info for automatic bookkeeping.

Pros

Cons

Excellent inventory management module

No payroll capabilities

Simple setup process

Expensive for businesses with a lot of team members (unlimited user plan $169/month)

Built-in CRM function

No time-tracking features

Pulls in banking info for automatic bookkeeping


Available for: Web application (cloud-based software)

Shopify App or Integration: No

Pricing: 

  • 30-day free trials 
  • Self - $9/mo
  • Pro - $19/mo
  • Plus - $19/mo
  • Team - $69/mo
  • Unlimited - $169/mo

 

9. Zoho Books

best accounting software for shopify

Zoho Books is an online accounting software offering accounts payable, accounts receivable, and inventory management capabilities. Known for its blazing-fast invoicing and robust bookkeeping features, it provides a lot of functionality at an affordable price point, positioning itself as a great alternative to more expensive options.

Highlight Features: 

  • Mobile Accounting: The mobile app can complete Most accounting tasks, offering flexibility and convenience.
  • Powerful Free Version: The free version of Zoho Books offers a comprehensive set of features, making it accessible to businesses with limited budgets.
  • Affordability: Zoho Books is more affordable than similar accounting software options, making it suitable for small and medium-sized businesses.
  • Multicurrency Capabilities: Multicurrency support is available in the top-tier plan, enabling businesses to operate globally.

Pros

Cons

Most accounting tasks possible through the mobile app

Must pay for advanced features like project tracking and workflow automation

Fairly powerful free version of software

No ability to track fixed assets like real estate, land, or equipment

More affordable than similar accounting software

Limited number of users with each tier


Available for: Web application (cloud-based software)

Shopify app or integration: Yes

Pricing: 

  • FREE plan
  • Standard - $10/mo
  • Professional - $20/mo
  • Premium - $30/mo
  • Elite - $100/mo
  • Ultimate - $200/mo

 

10. Xero

best accounting software for shopify

Xero is an intelligent accounting software tool for small businesses, focusing on ease of use and mobile accessibility. It offers real-time updates across multiple devices, enabling business owners to stay informed wherever they are. With a clean interface, Xero handles various accounting tasks, including payroll, expense tracking, billing, and invoicing.


Highlight Features

  • Mobile Accessibility: Synced across multiple devices for on-the-go access.
  • Real-Time Updates: Provides the latest information instantly.
  • Intuitive Interface: Clean and user-friendly interface for easy navigation.
  • Comprehensive Accounting: Handles payroll, expense tracking, billing, and more.
  • Unlimited Users: All plans offer unlimited users for collaboration.
  • Hubdoc Integration: Automatic capture of receipts and bills in all plan tiers.
  • Fixed Asset Management: Capable of managing fixed assets effectively.
  • Project Tracking: Offers efficient project tracking capabilities.

Pros

Cons

Unlimited users for all plans

Payment processing may lag for PayPal transactions

Hubdoc included in all plan tiers

No automatic reminders for unpaid invoices

Can manage fixed assets

No phone support


Available for: Web application (cloud-based software)

Shopify app or integration: Yes; third-party integrations available

Pricing:

  • Starter - $29/mo
  • Standard - $46/mo
  • Premium - $62/mo

 

11. Profiteer

best accounting software for shopify

Profiteer is specialized accounting software tailored to eCommerce businesses, enabling them to track and maximize their profits effectively. Focusing on real-time financial tracking and decision-making, Profiteer provides detailed insights into revenue, costs, and profitability margins.

Highlight Features

  • Real-time Profit Tracking: Provides real-time tracking of sales and profitability.
  • Customizable Reports: Offers customizable reports for in-depth financial analysis.
  • Automated Expense Tracking: Reduces manual data entry with automated expense tracking.

Pros

Cons

Real-time tracking of sales and profitability

May be too specialized for businesses outside of eCommerce

Customizable reports for detailed analysis

Limited integrations with third-party apps outside of Shopify

Automated expense tracking

Advanced features require higher-tier plans


Shopify Integration: Yes

Pricing:

  • 3-day free trial
  • Basic plan - $15/mo
  • Large Inventory - $30/mo

 

12. Shoeboxed

best accounting software for shopify

Shoeboxed is an accounting tool designed specifically for Shopify store owners to manage receipts and expenses. It offers features like receipt organization, mobile scanning, and a unique mail-in receipt scanning service called the Magic Envelope.

Highlight Features

  • Mobile App: Conveniently scan receipts on the go with the mobile app.
  • Magic Envelope Service: Unique mail-in receipt scanning service for converting physical receipts into digital data.
  • Expense Tracking: Simplifies expense tracking and categorization for tax deductions and expense reports.

Pros

Cons

Receipt organization for simplified expense tracking

Mobile application plans are only digital, Magic Envelope plans are desktop-only

Mobile scanning for inventory receipts and other business expenses

QuickBooks integration for streamlined financial data


Pricing: 

  • Start up - $29/mo
  • Professional - $59/mo
  • Business - $89/mo

 

13. NetSuite 

best accounting software for shopify

NetSuite is a comprehensive accounting solution primarily designed for large enterprises. It offers extensive reporting features, including prebuilt financial reports and customizable reports, to provide insights into the performance of Shopify businesses.

Highlight Features

  • Reporting Features: Prebuilt and customizable reports such as income statements, balance sheets, and cash flow statements.
  • Financial Insights: Effective tools for trend identification, result monitoring, and financial issue diagnosis.
  • Comprehensive Applications: Flexible billing, multiple business management, mobile app, and inventory management.
  • Real-time Visibility: Accessible from anywhere with real-time data visibility.

Pros

Cons

Comprehensive solution for Shopify businesses

Difficult to configure or implement

Easy access from anywhere

Not suitable for small businesses

Scalable and customizable

Expensive for small businesses

Robust analytic and reporting tools

Pricing details unavailable on the website

Real-time visibility


Available for: large enterprises

Pricing: Pricing details are unavailable on the website.

 

14. Synder Sync

best accounting software for shopify

Synder Sync is a comprehensive financial management tool designed specifically for Shopify merchants. It automates transaction recording and integrates seamlessly with Shopify stores, payment gateways, and accounting systems to streamline accounting processes.

Highlight Features

  • Automated Transaction Recording: Seamlessly syncs transaction data between Shopify, payment gateways, and accounting systems, eliminating manual data entry.
  • Flexible Detail Level: Choose between comprehensive transaction details or daily summary syncs.
  • Historical Data Import: Effortlessly import historical transaction data without limitations.
  • Duplicate Detection: Intelligent mechanism detects and prevents duplicate entries or errors.
  • Rollback Feature: Easily restore books to previous states in case of issues with synced transactions.
  • Customizable P&L Reports: Tailor Profit and Loss reports to include details from all business units, ensuring comprehensive financial insights.

Available for: Web application (cloud)

Pricing: 

  • Medium: $61/mo
  • Scale: from $110/mo
  • Large: from $275/mo
  • Enterprise: Contact Synder Sync team

 

15. Less Accounting

best accounting software for shopify

Less Accounting is an accounting software known for its beautiful dashboard and user-friendly layout. It simplifies accounting tasks and offers helpful features such as automated reports and deadline reminders, ensuring your financial activities stay on track.

Highlight Features

  • Beautiful Dashboard: Intuitive and visually appealing dashboard layout for easy navigation.
  • Automated Reports: Receive automated reports about your business performance and deadline reminders.
  • Payment Integration: Integrates with Paypal, Stripe, Square, and WePay for seamless online transactions.
  • Budget Creation: Users can create personal finance and business monitoring budgets.
  • Bookkeeping Features: Includes recurring invoices, financial reporting, time tracking, and more.

Pricing: 

  • Standard plan: $24/mo
  • Bookkeeping Copilot: Contact Less Accounting Team

 

16. Bench

best accounting software for shopify

Bench is a human-assisted AI accounting app designed to streamline bookkeeping for Shopify businesses. It offers robust financial reporting and management, allowing business owners and accountants to focus on core operations while it handles bookkeeping tasks efficiently.

Highlight Features

  • Human-Assisted AI: Combines AI technology with human expertise to provide accurate and efficient bookkeeping.
  • Seamless Integration with Shopify: Perfect integration with Shopify apps for smooth financial data management.
  • Financial Reporting: Provides comprehensive financial reporting and management tools for growing online businesses.
  • Monthly Reports: Generates monthly reports summarizing expenses, payments, inventory, and total transactions.
  • Expert Online Support: Offers reliable online support from accounting experts for assistance and guidance.
  • Bank Account Synchronization: Syncs with business bank accounts to track transactions and prepare financial reports.

Available for: 

  • Web application (cloud)
  • Android and iOS devices

Shopify app or integration: Yes

Pricing: 

  • Essential - $249/mo
  • Premium - $399/mo

 

Shopify Accounting Software - FAQs

1. How does Shopify integrate with popular accounting software?

Shopify integrates with popular accounting software through apps or plugins, enabling seamless data transfer between your Shopify store and your chosen accounting solution. These integrations facilitate synchronizing crucial financial data, including sales, expenses, and other transactional information.

There are two primary methods of integration:

  • Direct Integration: Some accounting software solutions offer direct integration with Shopify. In this scenario, merchants can connect their Shopify store directly to their chosen accounting software within the Shopify dashboard. 
  • Third-Party Tools or Manual Data Entry: Some accounting software solutions may require third-party tools or manual data entry to integrate with Shopify. In such cases, merchants may need to utilize third-party apps or plugins to facilitate data transfer between Shopify and their accounting software.

Shopify provides merchants flexible integration options to connect with popular accounting software solutions. 

2. Are there free accounting software options compatible with Shopify?

Yes, there are free accounting software options compatible with Shopify, such as Wave. However, they may need more features compared to paid options. Consider investing in a premium accounting software subscription for a more comprehensive solution. Some paid options offer free trials or limited free plans to test the software before committing to a subscription.

3. Which accounting software offers the most comprehensive features for Shopify users?

The most comprehensive accounting software for Shopify users varies depending on individual business requirements. However, some popular options known for their extensive features include FreshBooks, QuickBooks, and Xero. These platforms offer a range of functionalities, such as automated bookkeeping, seamless integration with Shopify, and user-friendly interfaces. Ultimately, choosing these options depends on business size, specific needs, and budget constraints.

Final Thoughts

Choosing the right accounting software can be pivotal to the success of your Shopify business. From streamlining financial management to automating accounting tasks, these top accounting tools offer many features to suit the needs of online entrepreneurs. With various options catering to businesses of all sizes, finding the perfect fit for your Shopify store has always been challenging. Leverage efficiency, accuracy, and growth with Shopify's best accounting software solutions helping you focus on what matters – driving your business forward.

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